Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
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thf1Conserved hypothetical protein; May be involved in photosynthetic membrane biogenesis. (239 aa)    
Predicted Functional Partners:
psbB
Photosystem II P680 chlorophyll A apoprotein; One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light- induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation; Belongs to the PsbB/PsbC family. PsbB subfamily.
  
 
   0.902
psbW
Photosystem II reaction center protein PsbW; Identified by similarity to SP:Q55356; match to protein family HMM PF03912; Belongs to the Psb28 family.
  
   
 0.779
CYA_0356
Conserved hypothetical protein; Identified by similarity to GB:BAD78263.1.
  
     0.774
CYA_0013
Conserved hypothetical protein.
  
     0.773
CYA_1939
Conserved hypothetical protein.
  
     0.773
CYA_1402
Conserved hypothetical protein.
  
     0.772
CYA_1247
Conserved hypothetical protein; Identified by match to protein family HMM PF06485.
  
    0.771
CYA_2892
Conserved hypothetical protein.
  
     0.768
CYA_2036
Conserved hypothetical protein; Identified by similarity to GB:BAC91704.1.
  
    0.767
CYA_0848
BNR/Asp-box repeat protein; Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity.
  
   
 0.758
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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