Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CYA_2183Starch binding domain protein; Identified by match to protein family HMM PF00686. (763 aa)    
Predicted Functional Partners:
CYA_1539
Conserved hypothetical protein; Identified by match to protein family HMM PF05685.
  
     0.671
CYA_1540
Conserved hypothetical protein; Identified by similarity to GB:BAC91077.1; match to protein family HMM PF05685.
  
     0.668
CYA_1455
Conserved hypothetical protein; Identified by similarity to GB:BAC90967.1.
  
     0.627
CYA_1179
Conserved hypothetical protein.
  
    0.564
CYA_1436
Peptidase, M8 (leishmanolysin) family.
   
 
 0.560
CYA_0342
Conserved hypothetical protein; Identified by similarity to GB:BAC91744.1.
  
     0.541
CYA_2431
S-layer domain protein.
  
 
   0.498
CYA_1108
Transporter, outer membrane receptor (OMR) family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.490
CYA_0349
UvrD/REP helicase domain protein; Identified by match to protein family HMM PF00580.
  
    0.443
CYA_2633
Putative DNA-binding protein; Identified by similarity to SP:P06966.
  
     0.442
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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