STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_2219Putative arylamine N-acetyltransferase, truncation; Identified by similarity to GB:BAB51429.1; Belongs to the arylamine N-acetyltransferase family. (141 aa)    
Predicted Functional Partners:
CYA_2222
Putative N-hydroxyarylamine O-acetyltransferase, truncation; Identified by similarity to GB:CAF05656.1.
  
     0.762
CYA_0924
FG-GAP repeat/ASPIC/UnbV domain protein; Identified by match to protein family HMM PF01839; match to protein family HMM PF07593.
  
     0.635
pnpA
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
 
     0.601
CYA_2827
Identified by match to protein family HMM PF00149.
  
     0.483
CYA_1068
Putative lignostilbene-alpha,beta-dioxygenase; Identified by similarity to GB:AAC60447.2; match to protein family HMM PF03055.
  
     0.450
CYA_0408
Heme oxygenase; Identified by match to protein family HMM PF01126.
  
     0.412
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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