STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_2228Conserved domain protein. (235 aa)    
Predicted Functional Partners:
CYA_1184
Conserved domain protein.
  
     0.769
CYA_1571
Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01266.
  
     0.768
CYA_2047
Conserved hypothetical protein.
  
     0.768
CYA_2301
Conserved hypothetical protein.
  
     0.768
CYA_0824
Conserved hypothetical protein.
  
     0.763
CYA_2280
Conserved hypothetical protein.
  
     0.763
CYA_0314
Conserved hypothetical protein; Identified by similarity to GB:BAC09429.1; match to protein family HMM PF06868.
  
     0.762
CYA_0049
Conserved hypothetical protein; Identified by similarity to GB:BAC89600.1.
  
     0.758
CYA_1489
Conserved hypothetical protein; Identified by similarity to GB:BAC89679.1.
  
     0.755
CYA_2120
ATP synthase protein I; Identified by similarity to SP:P12403.
  
     0.754
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.