Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_2229Peptidase, S1C (protease Do) family; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. (420 aa)    
Predicted Functional Partners:
CYA_1393
TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.
  
 
 0.601
CYA_2230
Quaternary amine uptake ABC transporter (QAT) family, substrate-binding protein; Identified by similarity to SP:O32243; match to protein family HMM PF04069.
       0.474
CYA_2656
Ankyrin repeat protein; Identified by match to protein family HMM PF00023.
  
 0.469
CYA_2231
Quaternary amine uptake ABC transporter (QAT) family, ATP-binding protein; Identified by similarity to SP:O34992; match to protein family HMM PF00005.
       0.438
CYA_2232
Quaternary amine uptake ABC transporter (QAT) family, permease protein; Identified by match to protein family HMM PF00528.
       0.438
pnpA
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
  
 0.416
rsfS
Iojap protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
  
   0.412
CYA_0481
Hydrolase, alpha/beta fold family; Identified by match to protein family HMM PF00561.
  
  
  0.410
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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