Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_2231Quaternary amine uptake ABC transporter (QAT) family, ATP-binding protein; Identified by similarity to SP:O34992; match to protein family HMM PF00005. (322 aa)    
Predicted Functional Partners:
CYA_2230
Quaternary amine uptake ABC transporter (QAT) family, substrate-binding protein; Identified by similarity to SP:O32243; match to protein family HMM PF04069.
 
 0.998
CYA_2232
Quaternary amine uptake ABC transporter (QAT) family, permease protein; Identified by match to protein family HMM PF00528.
 
 0.997
CYA_2571
Quaternary amine ABC transporter (QAT) family, permease protein; Identified by similarity to SP:Q45461; match to protein family HMM PF00528.
 
 0.991
CYA_0152
Peptide/opine/nickel uptake ABC transporter (PepT) family, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
     
0.897
macB
Macrolide ABC transporter, permease protein; Identified by similarity to SP:P75831; match to protein family HMM PF02687.
 
      0.587
CYA_0923
Transporter, monovalent cation:proton antiporter-2 (CPA2) family; Identified by match to protein family HMM PF00999; match to protein family HMM PF02254; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
  
 0.472
CYA_2233
RNA polymerase sigma factor, ECF family; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR01199; Belongs to the sigma-70 factor family. ECF subfamily.
       0.445
CYA_2229
Peptidase, S1C (protease Do) family; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595.
       0.438
CYA_2234
Conserved hypothetical protein.
       0.414
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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