STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_2234Conserved hypothetical protein. (255 aa)    
Predicted Functional Partners:
CYA_2233
RNA polymerase sigma factor, ECF family; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR01199; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.953
CYA_0061
RNA polymerase sigma-70 factor family; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.859
CYA_0102
Conserved hypothetical protein.
  
     0.640
CYA_2235
VanW family protein.
       0.628
CYA_1490
RNA polymerase sigma-70 factor; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.592
CYA_2085
Conserved hypothetical protein; Identified by similarity to GB:BAC90914.1.
  
     0.549
CYA_0533
Conserved hypothetical protein; Identified by similarity to PIR:S75241.
  
     0.545
CYA_1043
Conserved hypothetical protein; Identified by similarity to PIR:AB2345.
  
     0.508
CYA_0942
Conserved hypothetical protein; Identified by similarity to PIR:AH2253.
  
 
 0.497
CYA_0569
Conserved domain protein.
  
     0.495
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.