Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_2249ISSoc2, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766. (426 aa)    
Predicted Functional Partners:
CYA_2248
Conserved hypothetical protein, truncation.
 
     0.886
CYA_2250
ISSoc2, resolvase; Identified by match to protein family HMM PF00239; match to protein family HMM PF00376.
       0.773
CYA_2245
Conserved hypothetical protein; Identified by similarity to GB:BAC90426.1.
       0.757
CYA_2246
Conserved hypothetical protein.
       0.757
CYA_2247
Identified by match to protein family HMM PF01523.
       0.757
CYA_0341
Conserved hypothetical protein; Identified by similarity to GB:BAB48108.1.
  
     0.748
CYA_2251
Conserved domain protein.
 
     0.654
CYA_2252
Peptidase, U62 family; Identified by match to protein family HMM PF01523.
       0.584
CYA_1312
Nucleotidyltransferase domain protein; Identified by match to protein family HMM PF01909.
  
     0.505
CYA_2243
Putative phosphatidylethanolamine-binding protein; Identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481.
       0.497
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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