STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_2293Putative cyclase/dehydrase; Identified by match to protein family HMM PF03364. (155 aa)    
Predicted Functional Partners:
CYA_2292
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
       0.773
CYA_1247
Conserved hypothetical protein; Identified by match to protein family HMM PF06485.
  
    0.688
CYA_0383
Conserved hypothetical protein; Identified by similarity to PIR:S75306; match to protein family HMM PF07082.
  
     0.680
CYA_0694
Conserved hypothetical protein.
  
     0.671
CYA_0712
Conserved hypothetical protein; Identified by similarity to PIR:AF2149.
  
     0.669
psbO
Photosystem II manganese-stabilizing protein; Identified by similarity to SP:P55221; match to protein family HMM PF01716.
  
     0.655
CYA_2799
Identified by match to protein family HMM PF07298.
  
     0.653
CYA_1402
Conserved hypothetical protein.
  
     0.651
CYA_0813
Putative membrane proteinprotein; Identified by similarity to PIR:AH1843.
  
     0.644
CYA_0356
Conserved hypothetical protein; Identified by similarity to GB:BAD78263.1.
  
     0.638
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.