Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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CYA_2294Antibiotic biosynthesis monooxygenase domain protein; Identified by match to protein family HMM PF03992. (110 aa)    
Predicted Functional Partners:
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
       0.701
CYA_1080
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF07719.
  
     0.647
CYA_2101
Conserved hypothetical protein; Identified by similarity to PIR:AF1933.
  
     0.637
CYA_2889
TM2 domain protein; Identified by match to protein family HMM PF05154.
  
     0.624
CYA_0660
Conserved hypothetical protein.
  
     0.623
CYA_0052
Conserved hypothetical protein; Identified by similarity to PIR:AE2426.
  
     0.621
CYA_0382
Conserved hypothetical protein; Identified by similarity to PIR:AI2167.
  
     0.616
CYA_2328
Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01266.
  
     0.615
CYA_0197
Putative pilin; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
     0.603
CYA_1668
Conserved hypothetical protein; Identified by similarity to GB:BAD78557.1.
  
     0.575
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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