Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CYA_2298Response regulator; Identified by match to protein family HMM PF00072. (247 aa)    
Predicted Functional Partners:
CYA_2836
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229.
  
 
 0.955
CYA_0201
DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
  
     0.763
CYA_2714
GAF domain/histidine kinase domain protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518.
  
     0.747
CYA_2351
Transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196.
  
     0.706
CYA_2155
Sensor histindine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518.
  
 
 0.639
CYA_1657
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
 
 0.606
CYA_2886
Sensory box histidine kinase; Identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07568; match to protein family HMM TIGR00229.
 
 
 0.598
CYA_2217
Sensor histidine kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF05226.
  
 
 0.531
tyrA
Prephenate dehydrogenase; Identified by similarity to SP:P20692; match to protein family HMM PF02153; match to protein family HMM PF02254; match to protein family HMM PF02558; match to protein family HMM PF03446; match to protein family HMM PF03807.
       0.494
CYA_2885
Response regulator; Identified by match to protein family HMM PF00072.
 
 
 
 0.480
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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