STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_2299Conserved hypothetical protein; Identified by similarity to GB:BAD79226.1. (178 aa)    
Predicted Functional Partners:
CYA_1498
Conserved hypothetical protein.
  
     0.654
CYA_0052
Conserved hypothetical protein; Identified by similarity to PIR:AE2426.
  
     0.653
CYA_0592
Conserved domain protein.
  
     0.639
CYA_2761
Conserved hypothetical protein; Identified by similarity to PIR:S74966.
  
     0.588
mraW
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
       0.519
CYA_0308
Conserved hypothetical protein.
  
     0.503
CYA_0938
FHA domain protein; Identified by match to protein family HMM PF00498.
  
     0.480
CYA_2515
Conserved hypothetical protein; Identified by similarity to PIR:AI2386.
  
     0.475
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
     0.472
CYA_2211
Conserved hypothetical protein.
  
     0.460
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.