Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cbiQCobalt ABC transporter, permease protein CbiQ; Identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454. (271 aa)    
Predicted Functional Partners:
CYA_2321
Putative cobalamin biosynthesis protein CbiM; Identified by match to protein family HMM PF01891.
 
 
 0.998
CYA_1609
Putative cobalt ABC transporter (CoT) family, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.992
CYA_2320
Conserved hypothetical protein.
 
   
 0.969
CYA_2319
Conserved hypothetical protein; Identified by similarity to GB:BAC08972.1.
 
   
 0.899
CYA_1893
Peptide/opine/nickel ABC transporter (PepT) family, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
  
 
 0.784
CYA_1024
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.682
CYA_1626
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.682
cbiG/cobJ-1
cbiG protein/precorrin-3B C17-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466; match to protein family HMM TIGR02467.
 
  
 0.664
cbiG/cobJ-2
cbiG protein/precorrin-3B C17-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466.
 
  
 0.661
cbiE/cbiT
precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiE/T subunits; Identified by match to protein family HMM PF00590; match to protein family HMM PF02390; match to protein family HMM TIGR02467; match to protein family HMM TIGR02469.
 
  
 0.601
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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