Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
petJCytochrome c6; Identified by similarity to SP:P28596; match to protein family HMM PF00034. (115 aa)    
Predicted Functional Partners:
petE
Plastocyanin; Identified by similarity to SP:Q51883; match to protein family HMM PF00127; match to protein family HMM TIGR02656.
    
 0.957
petH
ferredoxin--NADP reductase; Identified by similarity to SP:P00454; match to protein family HMM PF00175.
     
 0.953
CYA_1426
Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.
     
 0.936
CYA_0027
Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.
     
 0.932
CYA_0289
Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.
     
 0.916
CYA_1840
Ferredoxin, 2Fe-2S; Identified by match to protein family HMM PF00111; match to protein family HMM TIGR02008.
     
 0.900
psbV
Cytochrome c550; Low-potential cytochrome c that plays a role in the oxygen- evolving complex of photosystem II.
 
   
 0.889
psbO
Photosystem II manganese-stabilizing protein; Identified by similarity to SP:P55221; match to protein family HMM PF01716.
  
   
 0.817
psaL-2
Photosystem I reaction center subunit XI; Identified by match to protein family HMM PF02605.
  
   
 0.811
psbU
Photosystem II 12 kDa extrinsic protein PsbU; Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation.
  
   
 0.804
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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