Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_2401Peptidase, S8A (subtilisin) family; Identified by similarity to GB:AAD48483.1; match to protein family HMM PF00082. (618 aa)    
Predicted Functional Partners:
CYA_2402
Conserved hypothetical protein.
 
     0.887
CYA_2400
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
CYA_2656
Ankyrin repeat protein; Identified by match to protein family HMM PF00023.
  
 
 0.698
CYA_0189
Trypsin domain lipoprotein; Identified by match to protein family HMM PF00089; match to protein family HMM PF05738.
 
 0.630
CYA_2836
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229.
  
  
 0.521
CYA_0249
Conserved hypothetical protein.
  
   
 0.518
CYA_0117
Identified by match to protein family HMM PF03372.
 
  
 0.505
CYA_1895
Peptidase, M23B family; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551.
  
  
 0.430
CYA_1022
Leucine rich repeat protein; Identified by match to protein family HMM PF00560.
  
 
 0.426
CYA_0248
Transcriptional regulator, BlaI/MecI/CopY family; Identified by match to protein family HMM PF03965.
  
     0.420
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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