STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_2463Conserved hypothetical protein; Identified by similarity to PIR:AB1982. (92 aa)    
Predicted Functional Partners:
CYA_2462
Putative iron-sulfur cluster-binding protein; Identified by similarity to PIR:JC7085.
 
     0.909
CYA_2464
Dps protein; Identified by similarity to SP:Q55024; match to protein family HMM PF00210; Belongs to the Dps family.
 
     0.797
dpsA
Nutrient-stress induced DNA binding protein; Identified by similarity to GB:BAB75507.1; match to protein family HMM PF00210; Belongs to the Dps family.
 
     0.708
cpcD
Phycobilisome 8.9 kDa linker polypeptide, phycocyanin-associated, rod; Identified by similarity to SP:P31966; match to protein family HMM PF01383.
  
     0.705
CYA_0609
Conserved hypothetical protein, truncation; Identified by similarity to PIR:AH2183.
  
     0.651
CYA_0922
Conserved hypothetical protein; Identified by similarity to GB:BAC07718.1.
  
     0.646
CYA_2771
Conserved hypothetical protein; Identified by similarity to PIR:AD1978.
  
     0.631
CYA_2056
Conserved hypothetical protein; Identified by similarity to GB:BAC09967.1.
  
     0.613
CYA_2028
Conserved domain protein.
  
     0.600
CYA_1152
Conserved hypothetical protein.
  
     0.583
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.