Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CYA_2516Conserved hypothetical protein; Identified by similarity to GB:BAC07803.1; match to protein family HMM PF01935. (574 aa)    
Predicted Functional Partners:
CYA_2518
Conserved hypothetical protein.
 
 
   0.966
CYA_2517
Conserved hypothetical protein.
 
     0.947
CYA_2520
Identified by match to protein family HMM PF00149.
 
     0.947
CYA_2519
RecF/RecN/SMC N terminal domain protein; Identified by match to protein family HMM PF02463.
 
     0.946
CYA_1723
Conserved hypothetical protein; Identified by similarity to GB:BAC10028.1.
  
     0.667
CYA_0590
Conserved domain protein.
  
     0.650
CYA_1984
Conserved domain protein; Identified by similarity to PIR:AH2164.
  
     0.561
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
     0.550
CYA_2749
Conserved hypothetical protein; Identified by similarity to PIR:S76420.
  
     0.534
CYA_1494
Sensor histidine kinase; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518.
  
    0.523
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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