Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CYA_2544Conserved hypothetical protein; Identified by similarity to GB:BAD01988.1. (130 aa)    
Predicted Functional Partners:
cmr4
CRISPR-associated RAMP protein, Cmr4 family; Identified by match to protein family HMM PF03787; match to protein family HMM TIGR02580.
       0.795
cmr6
CRISPR-associated RAMP protein, Cmr6 family; Identified by match to protein family HMM PF03787.
       0.781
CYA_2543
Conserved hypothetical protein; Identified by similarity to GB:BAC88877.1; match to protein family HMM PF05685.
       0.773
CYA_2546
Conserved hypothetical protein; Identified by similarity to GB:BAD01991.1.
       0.682
crm2-2
CRISPR-associated protein, Crm2 family; Identified by match to protein family HMM TIGR02577.
       0.681
CYA_2541
Conserved hypothetical protein.
       0.594
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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