Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_2551Conserved hypothetical protein; Identified by similarity to GB:BAC92021.1; match to protein family HMM PF05685. (202 aa)    
Predicted Functional Partners:
CYA_2552
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
CYA_2550
Conserved hypothetical protein; Identified by similarity to PIR:S76377; match to protein family HMM PF05685.
 
    
0.758
CYA_1423
Conserved hypothetical protein; Identified by similarity to PIR:AD2438; match to protein family HMM PF05685.
  
     0.699
CYA_1013
Conserved hypothetical protein; Identified by similarity to PIR:AH2105; match to protein family HMM PF05685.
  
     0.655
CYA_0658
Conserved hypothetical protein; Identified by similarity to PIR:AD2411; match to protein family HMM PF05685.
  
     0.595
CYA_2549
Hypothetical protein; Identified by Glimmer2; putative.
       0.562
CYA_2548
CRISPR-associated protein, TM1812 family; Identified by match to protein family HMM TIGR02221; match to protein family HMM TIGR02549.
 
     0.555
CYA_0138
Conserved hypothetical protein, truncation.
  
     0.474
CYA_2546
Conserved hypothetical protein; Identified by similarity to GB:BAD01991.1.
  
     0.413
CYA_0334
Conserved hypothetical protein; Identified by similarity to PIR:AC2464; match to protein family HMM PF05685.
  
     0.411
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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