Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_2571Quaternary amine ABC transporter (QAT) family, permease protein; Identified by similarity to SP:Q45461; match to protein family HMM PF00528. (213 aa)    
Predicted Functional Partners:
CYA_2230
Quaternary amine uptake ABC transporter (QAT) family, substrate-binding protein; Identified by similarity to SP:O32243; match to protein family HMM PF04069.
 
 0.998
CYA_2231
Quaternary amine uptake ABC transporter (QAT) family, ATP-binding protein; Identified by similarity to SP:O34992; match to protein family HMM PF00005.
 
 0.991
CYA_2232
Quaternary amine uptake ABC transporter (QAT) family, permease protein; Identified by match to protein family HMM PF00528.
  
  
 
0.916
CYA_2569
Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
       0.773
CYA_2572
ISSoc2, resolvase; Identified by match to protein family HMM PF00239; match to protein family HMM PF00376.
       0.552
CYA_2573
ISSoc2, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.
       0.552
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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