CYA_2575 protein (Synechococcus sp. JA33Ab) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CYA_2575

Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. (369 aa)

Predicted Functional Partners:

CYA_2836

0.922

CYA_2569

0.856

CYA_0479

0.842

CYA_2738

0.818

CYA_2161

0.817

CYA_2739

0.817

CYA_2155

0.809

CYA_0093

0.804

CYA_1892

0.804

CYA_0421

0.798

Your Current Organism:

Synechococcus sp. JA33Ab

NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CYA_0093	CYA_0421	Response regulator; Identified by match to protein family HMM PF00072.	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.755
CYA_0093	CYA_2155	Response regulator; Identified by match to protein family HMM PF00072.	Sensor histindine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518.	0.653
CYA_0093	CYA_2161	Response regulator; Identified by match to protein family HMM PF00072.	Response regulator; Identified by similarity to SP:P43501; match to protein family HMM PF00072.	0.772
CYA_0093	CYA_2569	Response regulator; Identified by match to protein family HMM PF00072.	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.845
CYA_0093	CYA_2575	Response regulator; Identified by match to protein family HMM PF00072.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.804
CYA_0093	CYA_2836	Response regulator; Identified by match to protein family HMM PF00072.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229.	0.972
CYA_0421	CYA_0093	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	Response regulator; Identified by match to protein family HMM PF00072.	0.755
CYA_0421	CYA_2155	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	Sensor histindine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518.	0.653
CYA_0421	CYA_2569	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.833
CYA_0421	CYA_2575	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.798
CYA_0421	CYA_2836	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229.	0.962
CYA_0479	CYA_2155	Response regulator; Identified by match to protein family HMM PF00072.	Sensor histindine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518.	0.896
CYA_0479	CYA_2569	Response regulator; Identified by match to protein family HMM PF00072.	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.953
CYA_0479	CYA_2575	Response regulator; Identified by match to protein family HMM PF00072.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.842
CYA_0479	CYA_2836	Response regulator; Identified by match to protein family HMM PF00072.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229.	0.987
CYA_1892	CYA_2155	DNA-binding response regulator RpaA; Identified by similarity to GB:AAD30120.2; match to protein family HMM PF00072; match to protein family HMM PF00486.	Sensor histindine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518.	0.653
CYA_1892	CYA_2569	DNA-binding response regulator RpaA; Identified by similarity to GB:AAD30120.2; match to protein family HMM PF00072; match to protein family HMM PF00486.	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.846
CYA_1892	CYA_2575	DNA-binding response regulator RpaA; Identified by similarity to GB:AAD30120.2; match to protein family HMM PF00072; match to protein family HMM PF00486.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.804
CYA_1892	CYA_2836	DNA-binding response regulator RpaA; Identified by similarity to GB:AAD30120.2; match to protein family HMM PF00072; match to protein family HMM PF00486.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229.	0.962
CYA_2155	CYA_0093	Sensor histindine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518.	Response regulator; Identified by match to protein family HMM PF00072.	0.653

page 1 of 4

Server load: high (90%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About