STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_2597Conserved domain protein; Identified by similarity to GB:CAE20678.1. (70 aa)    
Predicted Functional Partners:
hisC
Histidinol-phosphate aminotransferase; Identified by match to protein family HMM PF00155; match to protein family HMM TIGR01141; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
    
  0.901
CYA_0478
Putative 4-hydroxyphenylpyruvate dioxygenase; Identified by match to protein family HMM PF00903.
     
  0.900
aspC
Aspartate aminotransferase; Identified by similarity to SP:Q56232; match to protein family HMM PF00155.
     
  0.900
CYA_2596
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
CYA_2595
Putative endoribonuclease L-PSP; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.
   
 
 0.647
nifU
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
 
   
 0.631
CYA_1843
Transcriptional regulator PatB; Identified by match to protein family HMM PF00037; match to protein family HMM PF01381.
  
     0.548
CYA_0052
Conserved hypothetical protein; Identified by similarity to PIR:AE2426.
  
     0.545
CYA_1572
Conserved hypothetical protein.
  
     0.540
CYA_2603
Conserved hypothetical protein; Identified by similarity to SP:P73883.
  
   
 0.524
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.