| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CYA_1393 | CYA_2616 | CYA_1393 | CYA_2616 | TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721. | Putative DNA mismatch repair protein MutL; Identified by match to protein family HMM PF01119; match to protein family HMM PF02518; Belongs to the DNA mismatch repair MutL/HexB family. | 0.566 |
| CYA_1393 | CYA_2628 | CYA_1393 | CYA_2628 | TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721. | Putative ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614. | 0.836 |
| CYA_1393 | gyrB | CYA_1393 | CYA_1523 | TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721. | DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.498 |
| CYA_1393 | polA | CYA_1393 | CYA_0531 | TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.960 |
| CYA_1393 | recA | CYA_1393 | CYA_1092 | TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.577 |
| CYA_1393 | topA | CYA_1393 | CYA_0561 | TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.626 |
| CYA_2616 | CYA_1393 | CYA_2616 | CYA_1393 | Putative DNA mismatch repair protein MutL; Identified by match to protein family HMM PF01119; match to protein family HMM PF02518; Belongs to the DNA mismatch repair MutL/HexB family. | TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721. | 0.566 |
| CYA_2616 | CYA_2628 | CYA_2616 | CYA_2628 | Putative DNA mismatch repair protein MutL; Identified by match to protein family HMM PF01119; match to protein family HMM PF02518; Belongs to the DNA mismatch repair MutL/HexB family. | Putative ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614. | 0.907 |
| CYA_2616 | gyrB | CYA_2616 | CYA_1523 | Putative DNA mismatch repair protein MutL; Identified by match to protein family HMM PF01119; match to protein family HMM PF02518; Belongs to the DNA mismatch repair MutL/HexB family. | DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.498 |
| CYA_2616 | mutS | CYA_2616 | CYA_2035 | Putative DNA mismatch repair protein MutL; Identified by match to protein family HMM PF01119; match to protein family HMM PF02518; Belongs to the DNA mismatch repair MutL/HexB family. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.996 |
| CYA_2616 | polA | CYA_2616 | CYA_0531 | Putative DNA mismatch repair protein MutL; Identified by match to protein family HMM PF01119; match to protein family HMM PF02518; Belongs to the DNA mismatch repair MutL/HexB family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.958 |
| CYA_2616 | recA | CYA_2616 | CYA_1092 | Putative DNA mismatch repair protein MutL; Identified by match to protein family HMM PF01119; match to protein family HMM PF02518; Belongs to the DNA mismatch repair MutL/HexB family. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.719 |
| CYA_2616 | recJ-1 | CYA_2616 | CYA_1120 | Putative DNA mismatch repair protein MutL; Identified by match to protein family HMM PF01119; match to protein family HMM PF02518; Belongs to the DNA mismatch repair MutL/HexB family. | single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644. | 0.637 |
| CYA_2616 | recJ-2 | CYA_2616 | CYA_2826 | Putative DNA mismatch repair protein MutL; Identified by match to protein family HMM PF01119; match to protein family HMM PF02518; Belongs to the DNA mismatch repair MutL/HexB family. | single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM TIGR00644. | 0.657 |
| CYA_2616 | rnhB | CYA_2616 | CYA_0822 | Putative DNA mismatch repair protein MutL; Identified by match to protein family HMM PF01119; match to protein family HMM PF02518; Belongs to the DNA mismatch repair MutL/HexB family. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. | 0.419 |
| CYA_2616 | topA | CYA_2616 | CYA_0561 | Putative DNA mismatch repair protein MutL; Identified by match to protein family HMM PF01119; match to protein family HMM PF02518; Belongs to the DNA mismatch repair MutL/HexB family. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.522 |
| CYA_2628 | CYA_1393 | CYA_2628 | CYA_1393 | Putative ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614. | TPR repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721. | 0.836 |
| CYA_2628 | CYA_2616 | CYA_2628 | CYA_2616 | Putative ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614. | Putative DNA mismatch repair protein MutL; Identified by match to protein family HMM PF01119; match to protein family HMM PF02518; Belongs to the DNA mismatch repair MutL/HexB family. | 0.907 |
| CYA_2628 | gyrB | CYA_2628 | CYA_1523 | Putative ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614. | DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.767 |
| CYA_2628 | mutS | CYA_2628 | CYA_2035 | Putative ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.787 |