Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CYA_2676FHA domain protein; Identified by match to protein family HMM PF00498. (192 aa)    
Predicted Functional Partners:
CYA_2673
DnaJ domain protein; Identified by match to protein family HMM PF00226; match to protein family HMM PF07719.
 
 
   0.712
CYA_2562
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.641
CYA_2000
Conserved hypothetical protein.
  
     0.617
CYA_0069
Conserved hypothetical protein; Identified by similarity to PIR:AH1812.
  
     0.605
CYA_0160
Conserved hypothetical protein; Identified by similarity to PIR:AB2317.
  
     0.603
CYA_0290
Conserved hypothetical protein; Identified by similarity to GB:BAD80164.1.
  
    0.596
CYA_0052
Conserved hypothetical protein; Identified by similarity to PIR:AE2426.
  
     0.579
CYA_0834
V4R domain protein.
  
     0.548
CYA_2749
Conserved hypothetical protein; Identified by similarity to PIR:S76420.
  
     0.526
CYA_0522
V4R domain protein; Identified by match to protein family HMM PF02830.
  
     0.521
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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