STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_2690FHA domain protein; Identified by match to protein family HMM PF00498. (180 aa)    
Predicted Functional Partners:
CYA_2692
FHA domain protein; Identified by match to protein family HMM PF00498.
 
     0.791
CYA_2693
Conserved hypothetical protein; Identified by similarity to PIR:AD2030.
 
     0.786
CYA_0598
Conserved domain protein.
  
     0.760
CYA_1494
Sensor histidine kinase; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518.
  
    0.741
CYA_0564
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.739
CYA_0942
Conserved hypothetical protein; Identified by similarity to PIR:AH2253.
  
    0.724
CYA_0592
Conserved domain protein.
  
     0.673
crm2-1
CRISPR-associated protein, Crm2 family; Identified by match to protein family HMM TIGR01872; match to protein family HMM TIGR02577.
  
     0.653
CYA_0666
Conserved hypothetical protein; Identified by similarity to GB:BAC90862.1.
  
    0.649
CYA_0881
CRISPR-associated RAMP protein; Identified by match to protein family HMM PF03787.
  
     0.647
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.