STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_2741Putative methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672. (816 aa)    
Predicted Functional Partners:
CYA_2155
Sensor histindine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518.
 
 0.998
CYA_2742
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895.
 
 0.998
cheW
Chemotaxis protein cheW; Identified by similarity to SP:P07365; match to protein family HMM PF01584.
 
 0.971
CYA_2162
Response regulator; Identified by match to protein family HMM PF00072.
  
  0.944
CYA_2737
Response regulator; Identified by match to protein family HMM PF00072.
 
 
  0.936
CYA_2644
Response regulator; Identified by match to protein family HMM PF00072.
  
  0.933
CYA_2160
CheW domain protein; Identified by match to protein family HMM PF01584.
 
 0.929
CYA_2156
Putative methyl-accepting chemotaxis protein, truncation; Identified by match to protein family HMM PF00015.
  
  
 
0.905
CYA_2836
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229.
 
 
 0.880
CYA_2738
Response regulator; Identified by match to protein family HMM PF00072.
 
  0.818
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.