Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_2778Conserved hypothetical protein; Identified by similarity to GB:BAC08685.1; match to protein family HMM PF03745. (130 aa)    
Predicted Functional Partners:
CYA_2779
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518.
       0.773
CYA_0430
Conserved hypothetical protein; Identified by similarity to PIR:S76577.
  
     0.557
ndhN
Conserved hypothetical protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
  
     0.540
CYA_2070
Conserved hypothetical protein; Identified by similarity to GB:BAC08024.1.
  
     0.530
CYA_0056
Identified by match to protein family HMM PF05768.
  
     0.517
dtd3
Hydrolase, TatD family; Catalyzes the hydrolysis of D-tyrosyl-tRNA(Tyr).
       0.499
CYA_2241
Conserved hypothetical protein.
  
     0.488
CYA_1716
Conserved hypothetical protein; Identified by similarity to GB:BAC08662.1.
  
     0.480
CYA_1486
S-layer domain protein; Identified by match to protein family HMM PF00395.
  
     0.464
ndhM
Conserved hypothetical protein; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
  
     0.424
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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