STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugpBGlycerol-3-phosphate ABC transporter, glycerol-3-phosphate binding protein; Identified by similarity to SP:P10904; match to protein family HMM PF01547; match to protein family HMM TIGR01409. (450 aa)    
Predicted Functional Partners:
upgA
Glycerol-3-phosphate ABC transporter, permease protein; Identified by similarity to SP:P10905; match to protein family HMM PF00528.
 
 0.998
CYA_1370
Putative sn-glycerol-3-phosphate ABC transporter, permease protein; Identified by similarity to SP:P10906; match to protein family HMM PF00528.
 
 0.997
CYA_1441
Carbohydrate uptake ABC transporter-1 (CUT1) family, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
 
 0.967
CYA_2783
Ferric iron uptake ABC transporter (FeT) family, permease protein; Identified by match to protein family HMM PF00528.
 
   
 0.736
CYA_2782
Brachyspira iron ABC transporter (BIT) family, iron-binding protein; Identified by match to protein family HMM PF01547.
 
    0.726
CYA_2784
Hypothetical protein; Identified by Glimmer2; putative.
       0.601
CYA_2836
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229.
     
 0.481
CYA_1122
Identified by match to protein family HMM PF00149.
 
     0.420
CYA_2306
Glycosyl hydrolase, family 31; Identified by match to protein family HMM PF01055; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.408
CYA_0909
Glycerophosphoryl diester phosphodiesterase family protein; Identified by match to protein family HMM PF03009.
 
  
 0.406
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.