STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYA_2809ATPase, AAA family; Identified by match to protein family HMM PF00004; Belongs to the AAA ATPase family. (629 aa)    
Predicted Functional Partners:
gvpN
Gas vesicle protein GvpN; Identified by match to protein family HMM PF07726; match to protein family HMM PF07728; match to protein family HMM TIGR02640.
  
     0.698
CYA_1230
Gas vesicle protein, GvpL/GvpF family; Identified by similarity to SP:P55149; match to protein family HMM PF06386.
 
     0.682
gvpA
Gas vesicle protein A; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.
  
     0.637
gvpJ
Gas vesicle protein J; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
 
     0.629
gvpW
Gas vesicle protein W; Identified by similarity to GB:CAE11909.1.
 
     0.612
CYA_1104
Arsenite-antimonite (ArsAB) efflux family transporter, ATP-binding protein; Identified by match to protein family HMM PF02374; match to protein family HMM TIGR00345.
 
 
 
 0.582
gvpG
Gas vesicle protein G; Identified by match to protein family HMM PF05120.
 
     0.577
dnaN
DNA polymerase III, beta subunit; Identified by match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663.
  
 
 0.549
cpcS2
CpeS-like protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
       0.498
CYA_1762
Drug exporter-1 ABC transporter (DrugE1) family, ATP-binding protein; Identified by similarity to SP:P32010; match to protein family HMM PF00005.
  
   0.436
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.