Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CYA_2815Proton transporter, MotA/TolQ/ExbB proton channel family; Identified by match to protein family HMM PF01618. (238 aa)    
Predicted Functional Partners:
CYA_2816
Proton transporter, ExbD/TolR family; Identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472.
 
 
 0.998
CYA_2030
TonB family protein; Identified by similarity to GB:AAF04082.1; match to protein family HMM PF03544; match to protein family HMM TIGR01352.
 
 
 0.884
CYA_1245
Identified by match to protein family HMM TIGR01352.
 
 
 0.825
CYA_1209
Hydrophobic amino acid uptake transporter (HAAT) ABC transporter family, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
   
 0.739
CYA_1111
Putative membrane protein, YjgP/YjgQ family; Identified by match to protein family HMM PF03739.
 
  
 0.715
CYA_2458
Putative membrane protein, YjgP/YjgQ family; Identified by match to protein family HMM PF03739.
 
  
 0.706
lpxA
acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
  
 0.699
CYA_1211
Putative permease, YjgP/YjgQ family; Identified by match to protein family HMM PF03739.
  
     0.695
lpxB
lipid-A-disaccharide synthetase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
     0.695
CYA_0554
Membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244.
  
   
 0.670
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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