Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
CYA_2846ISSoc4, transposase orfB; Identified by similarity to PIR:AI1851. (169 aa)    
Predicted Functional Partners:
CYA_2845
ISSoc4, transposase orfA; Identified by similarity to PIR:AD2038.
 
    0.855
CYA_0037
ISSoc4, transposase orfA; Identified by similarity to PIR:AD2038.
  
    0.647
CYA_0999
ISSoc4, transposase orfA; Identified by similarity to PIR:AD2038.
  
    0.647
CYA_1126
ISSoc4, transposase orfA; Identified by similarity to PIR:AD2038.
  
    0.647
CYA_1291
ISSoc4, transposase orfA; Identified by similarity to GB:AAC97588.1.
  
    0.647
CYA_1358
ISSoc4, transposase orfA; Identified by similarity to PIR:AD2038.
  
    0.647
CYA_1661
ISSoc4, transposase orfA; Identified by similarity to GB:AAC97588.1.
  
    0.647
CYA_2639
ISSoc4, transposase orfA; Identified by similarity to PIR:AD2038.
  
    0.647
CYA_2709
ISSoc4, transposase orfA; Identified by similarity to PIR:AD2038.
  
    0.647
CYA_2082
ISSoc4, transposase orfA; Identified by similarity to PIR:AD2038.
  
    0.642
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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