Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYA_2853CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517. (194 aa)    
Predicted Functional Partners:
CYA_0185
Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494.
  
    0.757
CYA_0920
Conserved hypothetical protein; Identified by similarity to PIR:AB2462.
  
     0.744
CYA_1184
Conserved domain protein.
  
     0.737
CYA_0905
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.728
CYA_2047
Conserved hypothetical protein.
  
     0.716
CYA_1493
DnaJ domain protein; Identified by match to protein family HMM PF00226; match to protein family HMM PF07721.
  
     0.713
CYA_1571
Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01266.
  
    0.712
CYA_1986
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.697
CYA_0214
Conserved hypothetical protein.
  
     0.691
CYA_1939
Conserved hypothetical protein.
  
     0.676
Your Current Organism:
Synechococcus sp. JA33Ab
NCBI taxonomy Id: 321327
Other names: Cyanobacteria bacterium Yellowstone A-Prime, S. sp. JA-3-3Ab, Synechococcus sp. JA-3-3Ab, Synechococcus sp. OS-type A str. JA-3-3Ab, Synechococcus sp. OS-type A strain JA-3-3Ab
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