STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYB_0234Polyamine/opine/phosphonate uptake ABC transporter (POPT) family, permease protein; Identified by match to protein family HMM PF00528. (310 aa)    
Predicted Functional Partners:
CYB_0545
Polyamine/opine/phosphonate uptake ABC transporter (POPT) family, permease protein; Identified by match to protein family HMM PF00528.
 
 0.988
CYB_1464
Polyamine/opine/phosphonate uptake ABC transporter family,periplasmic substrate-binding protein; Identified by match to protein family HMM PF01547.
 
 
 0.988
CYB_2079
Polyamine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187; Belongs to the ABC transporter superfamily.
 0.988
CYB_1762
Polyamine ABC transporter, periplasmic polyamine-binding protein; Identified by similarity to SP:P23861; match to protein family HMM TIGR01409.
 
 
 0.985
CYB_0024
ABC transporter, ATP-binding protein; Identified by similarity to SP:P31134; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 0.975
CYB_0130
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
0.962
CYB_0132
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
  
 
0.907
CYB_0027
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SM00070.
    
  0.905
CYB_0505
Polyamine transporter, periplasmic polyamine-binding protein; Identified by match to protein family HMM PF01547.
 
  
 0.882
potA
Spermidine/putrescine ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
 0.860
Your Current Organism:
Synechococcus sp. JA23Ba
NCBI taxonomy Id: 321332
Other names: Cyanobacteria bacterium Yellowstone B-Prime, S. sp. JA-2-3B'a(2-13), Synechococcus sp. JA-2-3B'a(2-13)
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