STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYB_0874Conserved hypothetical protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (185 aa)    
Predicted Functional Partners:
CYB_1576
Conserved hypothetical protein; Identified by similarity to GB:BAC90967.1.
  
     0.522
CYB_2001
Response regulator; Identified by match to protein family HMM PF00072.
  
     0.505
purB
Adenylosuccinate lyase; Identified by match to protein family HMM PF00206; match to protein family HMM TIGR00928; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
     
  0.499
CYB_0875
Hypothetical protein; Identified by Glimmer2; putative.
       0.482
CYB_0876
Hypothetical protein; Identified by Glimmer2; putative.
       0.482
CYB_0113
Antioxidant, AhpC/Tsa family; Identified by match to protein family HMM PF00578.
  
  
 0.414
CYB_2254
Antioxidant, AhpC/Tsa family; Identified by match to protein family HMM PF00578.
  
  
 0.414
Your Current Organism:
Synechococcus sp. JA23Ba
NCBI taxonomy Id: 321332
Other names: Cyanobacteria bacterium Yellowstone B-Prime, S. sp. JA-2-3B'a(2-13), Synechococcus sp. JA-2-3B'a(2-13)
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