STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYB_0977Conserved hypothetical protein; Identified by similarity to GB:BAC09647.1; match to protein family HMM PF01935. (575 aa)    
Predicted Functional Partners:
CYB_0676
Conserved hypothetical protein.
 
 
 
 0.853
CYB_0296
Conserved hypothetical protein; Identified by similarity to PIR:AF1888.
 
     0.786
sbcD
Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
 
     0.778
CYB_1107
Exonuclease SbcC; Identified by match to protein family HMM PF02463.
 
     0.776
CYB_0554
Conserved hypothetical protein.
  
     0.655
CYB_0176
Glycosyl transferase, group 2; Identified by match to protein family HMM PF00535.
  
     0.604
CYB_2692
Conserved hypothetical protein.
  
     0.586
CYB_2625
R3H domain protein; Identified by match to protein family HMM PF01424.
  
     0.562
CYB_2056
Conserved hypothetical protein; Identified by similarity to GB:BAC92187.1.
  
     0.543
CYB_0979
ISSoc1, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.
       0.541
Your Current Organism:
Synechococcus sp. JA23Ba
NCBI taxonomy Id: 321332
Other names: Cyanobacteria bacterium Yellowstone B-Prime, S. sp. JA-2-3B'a(2-13), Synechococcus sp. JA-2-3B'a(2-13)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.