Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CYB_1237Type IV pilin, putative; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532. (287 aa)    
Predicted Functional Partners:
pilC
Type IV pilus assembly protein PilC; Identified by match to protein family HMM PF00482.
  
  
 0.700
CYB_1238
Type IV pilin, putative; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
       0.645
carA
Carbamoyl-phosphate synthase, small subunit; Identified by match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368; Belongs to the CarA family.
       0.592
CYB_0912
DNA internalization competence protein, ComEC/Rec2 family; Identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360.
  
  
 0.585
CYB_1104
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.545
pilB
Type IV pilus assembly protein PilB; Identified by match to protein family HMM PF00437; match to protein family HMM PF05157.
  
 
 0.545
CYB_1239
Type IV pilin, putative; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
       0.521
CYB_1240
Conserved domain protein; Identified by similarity to GB:BAC08229.1.
       0.407
CYB_1241
Hypothetical protein; Identified by Glimmer2; putative.
       0.407
CYB_2756
Phospholipase D/competence protein ComEA helix-hairpin-helix domain protein; Identified by match to protein family HMM PF00614; match to protein family HMM PF00633; match to protein family HMM TIGR00426.
  
  
 0.405
Your Current Organism:
Synechococcus sp. JA23Ba
NCBI taxonomy Id: 321332
Other names: Cyanobacteria bacterium Yellowstone B-Prime, S. sp. JA-2-3B'a(2-13), Synechococcus sp. JA-2-3B'a(2-13)
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