STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYB_1242DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196. (198 aa)    
Predicted Functional Partners:
CYB_0507
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229.
  
 
 0.986
CYB_1354
Response regulator; Identified by match to protein family HMM PF00072.
  
     0.750
CYB_1240
Conserved domain protein; Identified by similarity to GB:BAC08229.1.
       0.693
CYB_1241
Hypothetical protein; Identified by Glimmer2; putative.
       0.693
CYB_0859
Transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196.
  
     0.663
CYB_2752
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518.
 
 
0.655
CYB_1640
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
 
0.570
CYB_1446
Sensor histidine kinase; Identified by match to protein family HMM PF02518.
  
 
 0.564
CYB_2751
Putative methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF01590.
 
 
 0.556
CYB_1653
Sensory box histidine kinase; Identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07568; match to protein family HMM TIGR00229.
 
  
 0.552
Your Current Organism:
Synechococcus sp. JA23Ba
NCBI taxonomy Id: 321332
Other names: Cyanobacteria bacterium Yellowstone B-Prime, S. sp. JA-2-3B'a(2-13), Synechococcus sp. JA-2-3B'a(2-13)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.