node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CYB_0117 | CYB_1663 | CYB_0117 | CYB_1663 | Putative single-strand binding protein; Identified by similarity to SP:P28046; match to protein family HMM PF00436; match to protein family HMM TIGR00621. | Identified by match to protein family HMM PF00436. | 0.928 |
CYB_0117 | dnaB | CYB_0117 | CYB_1081 | Putative single-strand binding protein; Identified by similarity to SP:P28046; match to protein family HMM PF00436; match to protein family HMM TIGR00621. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.835 |
CYB_0117 | dnaE | CYB_0117 | CYB_1183 | Putative single-strand binding protein; Identified by similarity to SP:P28046; match to protein family HMM PF00436; match to protein family HMM TIGR00621. | DNA polymerase III, alpha subunit; Identified by similarity to SP:O34623; match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594. | 0.800 |
CYB_0117 | dnaX | CYB_0117 | CYB_1304 | Putative single-strand binding protein; Identified by similarity to SP:P28046; match to protein family HMM PF00436; match to protein family HMM TIGR00621. | DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.807 |
CYB_0117 | priA | CYB_0117 | CYB_2227 | Putative single-strand binding protein; Identified by similarity to SP:P28046; match to protein family HMM PF00436; match to protein family HMM TIGR00621. | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.861 |
CYB_0117 | rplU | CYB_0117 | CYB_0742 | Putative single-strand binding protein; Identified by similarity to SP:P28046; match to protein family HMM PF00436; match to protein family HMM TIGR00621. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.775 |
CYB_0117 | rpsF | CYB_0117 | CYB_1664 | Putative single-strand binding protein; Identified by similarity to SP:P28046; match to protein family HMM PF00436; match to protein family HMM TIGR00621. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.786 |
CYB_0117 | rpsJ | CYB_0117 | CYB_0922 | Putative single-strand binding protein; Identified by similarity to SP:P28046; match to protein family HMM PF00436; match to protein family HMM TIGR00621. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.706 |
CYB_0117 | topA | CYB_0117 | CYB_2358 | Putative single-strand binding protein; Identified by similarity to SP:P28046; match to protein family HMM PF00436; match to protein family HMM TIGR00621. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.716 |
CYB_0265 | CYB_1663 | CYB_0265 | CYB_1663 | Conserved hypothetical protein; Identified by similarity to PIR:AF2018. | Identified by match to protein family HMM PF00436. | 0.735 |
CYB_1663 | CYB_0117 | CYB_1663 | CYB_0117 | Identified by match to protein family HMM PF00436. | Putative single-strand binding protein; Identified by similarity to SP:P28046; match to protein family HMM PF00436; match to protein family HMM TIGR00621. | 0.928 |
CYB_1663 | CYB_0265 | CYB_1663 | CYB_0265 | Identified by match to protein family HMM PF00436. | Conserved hypothetical protein; Identified by similarity to PIR:AF2018. | 0.735 |
CYB_1663 | dnaB | CYB_1663 | CYB_1081 | Identified by match to protein family HMM PF00436. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.795 |
CYB_1663 | dnaE | CYB_1663 | CYB_1183 | Identified by match to protein family HMM PF00436. | DNA polymerase III, alpha subunit; Identified by similarity to SP:O34623; match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594. | 0.800 |
CYB_1663 | dnaX | CYB_1663 | CYB_1304 | Identified by match to protein family HMM PF00436. | DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.807 |
CYB_1663 | priA | CYB_1663 | CYB_2227 | Identified by match to protein family HMM PF00436. | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.734 |
CYB_1663 | rplU | CYB_1663 | CYB_0742 | Identified by match to protein family HMM PF00436. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.729 |
CYB_1663 | rpsF | CYB_1663 | CYB_1664 | Identified by match to protein family HMM PF00436. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.904 |
CYB_1663 | rpsJ | CYB_1663 | CYB_0922 | Identified by match to protein family HMM PF00436. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.706 |
CYB_1663 | topA | CYB_1663 | CYB_2358 | Identified by match to protein family HMM PF00436. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.716 |