STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYB_1834Conserved hypothetical protein. (87 aa)    
Predicted Functional Partners:
clpX
ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
   
  
 0.775
CYB_1690
Conserved hypothetical protein; Identified by similarity to GB:BAD79291.1.
  
     0.774
xth
Exodeoxyribonuclease III; Identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633.
    
 
 0.773
CYB_1769
Conserved hypothetical protein; Identified by similarity to GB:BAC10019.1.
  
     0.773
CYB_0396
Conserved hypothetical protein.
  
   
 0.772
CYB_0412
Putative molybdenum-dependent nitrogenase; Identified by match to protein family HMM PF06967.
  
     0.770
CYB_2192
Putative molybdenum-dependent nitrogenase; Identified by match to protein family HMM PF06967.
  
     0.770
CYB_1311
Conserved hypothetical protein; Identified by similarity to GB:BAC09020.1.
  
     0.769
CYB_2248
Identified by match to protein family HMM TIGR02652.
  
     0.768
CYB_1308
Conserved hypothetical protein; Identified by similarity to GB:BAD78868.1.
  
   
 0.762
Your Current Organism:
Synechococcus sp. JA23Ba
NCBI taxonomy Id: 321332
Other names: Cyanobacteria bacterium Yellowstone B-Prime, S. sp. JA-2-3B'a(2-13), Synechococcus sp. JA-2-3B'a(2-13)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.