Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
CYB_2034 | CYB_2269 | Conserved hypothetical protein. | Putative iron-regulated protein A; Identified by similarity to SP:P12608. | 0.644 |
CYB_2034 | CYB_2271 | Conserved hypothetical protein. | Conserved hypothetical protein; Identified by similarity to GB:AAN66535.1; match to protein family HMM PF06537. | 0.446 |
CYB_2269 | CYB_2034 | Putative iron-regulated protein A; Identified by similarity to SP:P12608. | Conserved hypothetical protein. | 0.644 |
CYB_2269 | CYB_2271 | Putative iron-regulated protein A; Identified by similarity to SP:P12608. | Conserved hypothetical protein; Identified by similarity to GB:AAN66535.1; match to protein family HMM PF06537. | 0.973 |
CYB_2269 | CYB_2669 | Putative iron-regulated protein A; Identified by similarity to SP:P12608. | Ferric iron uptake ABC transporter (FeT) family, periplasmic substrate binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409. | 0.512 |
CYB_2271 | CYB_2034 | Conserved hypothetical protein; Identified by similarity to GB:AAN66535.1; match to protein family HMM PF06537. | Conserved hypothetical protein. | 0.446 |
CYB_2271 | CYB_2269 | Conserved hypothetical protein; Identified by similarity to GB:AAN66535.1; match to protein family HMM PF06537. | Putative iron-regulated protein A; Identified by similarity to SP:P12608. | 0.973 |
CYB_2271 | CYB_2669 | Conserved hypothetical protein; Identified by similarity to GB:AAN66535.1; match to protein family HMM PF06537. | Ferric iron uptake ABC transporter (FeT) family, periplasmic substrate binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409. | 0.409 |
CYB_2669 | CYB_2269 | Ferric iron uptake ABC transporter (FeT) family, periplasmic substrate binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409. | Putative iron-regulated protein A; Identified by similarity to SP:P12608. | 0.512 |
CYB_2669 | CYB_2271 | Ferric iron uptake ABC transporter (FeT) family, periplasmic substrate binding protein; Identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409. | Conserved hypothetical protein; Identified by similarity to GB:AAN66535.1; match to protein family HMM PF06537. | 0.409 |