STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYB_2413Conserved hypothetical protein; Identified by similarity to GB:BAC90426.1. (142 aa)    
Predicted Functional Partners:
CYB_2412
Conserved hypothetical protein.
 
     0.927
CYB_2530
Oxidoreductase, FAD-binding; Identified by match to protein family HMM PF01266.
  
     0.764
CYB_2348
PAP_fibrillin; Identified by match to protein family HMM PF04755.
  
     0.760
CYB_0108
Conserved hypothetical protein; Identified by similarity to PIR:AF2283.
  
     0.755
CYB_0605
Putative tocopherol cyclase; Identified by similarity to SP:Q94FY7.
  
     0.749
CYB_0520
Conserved hypothetical protein; Identified by similarity to PIR:AB2462.
  
     0.744
CYB_2237
Prenyltransferase, UbiA family; Identified by match to protein family HMM PF01040.
  
     0.744
CYB_0782
Conserved hypothetical protein; Identified by similarity to GB:BAC90045.1; match to protein family HMM TIGR02450.
  
     0.736
CYB_2411
Identified by match to protein family HMM PF01523.
       0.732
CYB_0551
Conserved hypothetical protein; Identified by similarity to GB:BAD80267.1.
 
     0.727
Your Current Organism:
Synechococcus sp. JA23Ba
NCBI taxonomy Id: 321332
Other names: Cyanobacteria bacterium Yellowstone B-Prime, S. sp. JA-2-3B'a(2-13), Synechococcus sp. JA-2-3B'a(2-13)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.