STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYB_2570Transcriptional regulator, Fur family; Identified by match to protein family HMM PF01475; Belongs to the Fur family. (149 aa)    
Predicted Functional Partners:
CYB_2571
Putative membrane protein.
       0.773
CYB_2569
Conserved hypothetical protein; Identified by similarity to PIR:AE2178.
       0.679
sufR
Iron-sulfur cluster biosynthesis transcriptional regulator SufR; Identified by similarity to PIR:S76597; match to protein family HMM PF08220; match to protein family HMM TIGR02702.
  
    0.516
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.502
gltS
Ferredoxin-dependent glutamate synthase; Identified by similarity to SP:P55038; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
     
 0.492
CYB_0113
Antioxidant, AhpC/Tsa family; Identified by match to protein family HMM PF00578.
  
  
 0.471
CYB_2254
Antioxidant, AhpC/Tsa family; Identified by match to protein family HMM PF00578.
  
  
 0.471
CYB_2567
Identified by match to protein family HMM PF02277; match to protein family HMM TIGR00303; Belongs to the UPF0284 family.
       0.469
trxB
Thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00085; match to protein family HMM PF07992; match to protein family HMM TIGR01292.
  
 
 0.463
CYB_1163
Manganese/zinc/iron chelate ABC transporter (MZT) family, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 0.437
Your Current Organism:
Synechococcus sp. JA23Ba
NCBI taxonomy Id: 321332
Other names: Cyanobacteria bacterium Yellowstone B-Prime, S. sp. JA-2-3B'a(2-13), Synechococcus sp. JA-2-3B'a(2-13)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.