STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYB_2800FG-GAP repeat/ASPIC/UnbV domain protein; Identified by match to protein family HMM PF01839; match to protein family HMM PF07593. (454 aa)    
Predicted Functional Partners:
CYB_0564
Helicase, UvrD/REP family; Identified by match to protein family HMM PF00580.
  
    0.682
CYB_1443
Putative arylamine N-acetyltransferase; Identified by similarity to SP:P50293; match to protein family HMM PF00797; Belongs to the arylamine N-acetyltransferase family.
  
     0.671
CYB_2435
Heme oxygenase; Identified by match to protein family HMM PF01126.
  
     0.604
CYB_2658
Conserved domain protein.
  
     0.592
CYB_1610
Conserved hypothetical protein; Identified by similarity to PIR:AG1925.
  
     0.562
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
       0.549
CYB_0829
Identified by match to protein family HMM PF00149.
  
     0.483
CYB_1603
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.457
CYB_0117
Putative single-strand binding protein; Identified by similarity to SP:P28046; match to protein family HMM PF00436; match to protein family HMM TIGR00621.
  
     0.452
CYB_1174
FHA domain protein; Identified by match to protein family HMM PF00498.
  
 
 0.450
Your Current Organism:
Synechococcus sp. JA23Ba
NCBI taxonomy Id: 321332
Other names: Cyanobacteria bacterium Yellowstone B-Prime, S. sp. JA-2-3B'a(2-13), Synechococcus sp. JA-2-3B'a(2-13)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.