STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYB_2867X-Pro dipeptidyl-peptidase (S15 family); Identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976. (539 aa)    
Predicted Functional Partners:
CYB_1420
Creatininase; Identified by match to protein family HMM PF02633.
 
     0.699
CYB_2866
Conserved hypothetical protein; Identified by similarity to PIR:AB2345.
 
     0.693
CYB_1554
Oxidoreductase, FAD-dependent domain protein; Identified by match to protein family HMM PF01266.
  
     0.680
CYB_1911
Identified by match to protein family HMM PF01565.
 
     0.605
CYB_1324
Antibiotic biosynthesis monooxygenase domain protein; Identified by match to protein family HMM PF03992.
  
     0.536
CYB_2868
Hypothetical protein; Identified by Glimmer2; putative.
       0.521
CYB_0123
Conserved hypothetical protein.
  
   
 0.520
CYB_1185
Conserved hypothetical protein; Identified by similarity to PIR:AE2426.
  
     0.453
CYB_0611
Conserved hypothetical protein.
  
     0.416
CYB_0728
Conserved hypothetical protein.
  
     0.412
Your Current Organism:
Synechococcus sp. JA23Ba
NCBI taxonomy Id: 321332
Other names: Cyanobacteria bacterium Yellowstone B-Prime, S. sp. JA-2-3B'a(2-13), Synechococcus sp. JA-2-3B'a(2-13)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.