STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYB_2872Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. (178 aa)    
Predicted Functional Partners:
CYB_2871
Conserved hypothetical protein; Identified by similarity to PIR:AG2372.
 
     0.824
CYB_0139
Conserved hypothetical protein.
  
    0.757
CYB_1072
TPR domain protein; Identified by match to protein family HMM PF07719.
  
     0.677
CYB_2869
Cupin domain protein; Identified by match to protein family HMM PF07883.
 
    0.580
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
     0.560
CYB_2873
Putative pterin-4a-carbinolamine dehydratase; Identified by match to protein family HMM PF01329.
       0.556
CYB_1850
Conserved hypothetical protein; Identified by similarity to GB:BAC08977.1.
  
     0.534
CYB_0551
Conserved hypothetical protein; Identified by similarity to GB:BAD80267.1.
  
     0.511
CYB_0728
Conserved hypothetical protein.
  
     0.511
CYB_2793
Conserved hypothetical protein; Identified by similarity to PIR:AC2355.
  
     0.506
Your Current Organism:
Synechococcus sp. JA23Ba
NCBI taxonomy Id: 321332
Other names: Cyanobacteria bacterium Yellowstone B-Prime, S. sp. JA-2-3B'a(2-13), Synechococcus sp. JA-2-3B'a(2-13)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.