Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CYB_2931Conserved hypothetical protein; Identified by similarity to PIR:AE2462; match to protein family HMM PF04286. (406 aa)    
Predicted Functional Partners:
CYB_2585
Conserved hypothetical protein.
  
     0.766
CYB_2565
Conserved hypothetical protein.
  
     0.764
CYB_1311
Conserved hypothetical protein; Identified by similarity to GB:BAC09020.1.
  
     0.728
CYB_2192
Putative molybdenum-dependent nitrogenase; Identified by match to protein family HMM PF06967.
  
     0.713
CYB_0412
Putative molybdenum-dependent nitrogenase; Identified by match to protein family HMM PF06967.
  
     0.709
CYB_2019
Conserved hypothetical protein.
  
     0.702
CYB_2248
Identified by match to protein family HMM TIGR02652.
  
     0.698
CYB_2423
Conserved hypothetical protein.
  
     0.675
CYB_1793
Conserved hypothetical protein; Identified by similarity to SP:P46204.
  
     0.672
CYB_1109
Conserved hypothetical protein; Identified by similarity to GB:BAC09253.1.
  
     0.665
Your Current Organism:
Synechococcus sp. JA23Ba
NCBI taxonomy Id: 321332
Other names: Cyanobacteria bacterium Yellowstone B-Prime, S. sp. JA-2-3B'a(2-13), Synechococcus sp. JA-2-3B'a(2-13)
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