STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY27846.1Iron-binding apoprotein IscA; Belongs to the HesB/IscA family. (127 aa)    
Predicted Functional Partners:
SDX97956.1
Cysteine desulfurase.
 
  
 0.949
SDX97986.1
Iron-regulated ABC transporter membrane component SufB.
  
 
 0.932
SDY11722.1
Ferredoxin, 2Fe-2S.
 
 
 0.932
SDY00867.1
NifU homolog involved in Fe-S cluster formation.
  
  
 0.925
SDY45495.1
DnaJ like chaperone protein.
  
 
 0.899
SDY02766.1
Monothiol glutaredoxin; Belongs to the glutaredoxin family. Monothiol subfamily.
 
 0.893
SDX97933.1
Transcriptional regulator, BadM/Rrf2 family.
 
  
 0.877
SDX98068.1
Fe-S cluster assembly ATP-binding protein.
  
 
 0.835
SDX98091.1
Fe-S cluster assembly protein SufD.
  
 
 0.813
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
 
   
 0.795
Your Current Organism:
Citreimonas salinaria
NCBI taxonomy Id: 321339
Other names: C. salinaria, Citreimonas salinaria Choi and Cho 2006, DSM 26880, JCM 13036, KCCM 42116, Rhodobacteraceae bacterium CL-SP20, strain CL-SP20
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