STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY35492.1Autotransporter secretion inner membrane protein TamB. (1415 aa)    
Predicted Functional Partners:
SDY35519.1
Autotransporter secretion outer membrane protein TamA.
 
 
 0.999
SDY39315.1
Transglycosylase SLT domain-containing protein.
  
     0.517
SDY73290.1
Putative peptidoglycan binding domain-containing protein.
  
     0.509
fur-2
Fur family transcriptional regulator, iron response regulator; Belongs to the Fur family.
       0.495
SDY06227.1
Acyl-CoA reductase.
   
    0.485
SDY35455.1
Multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.454
SDY35476.1
Membrane fusion protein, multidrug efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.454
SDY76771.1
3-oxoacid CoA-transferase subunit B.
   
    0.416
Your Current Organism:
Citreimonas salinaria
NCBI taxonomy Id: 321339
Other names: C. salinaria, Citreimonas salinaria Choi and Cho 2006, DSM 26880, JCM 13036, KCCM 42116, Rhodobacteraceae bacterium CL-SP20, strain CL-SP20
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