STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY55673.1Dihydroorotate oxidase B, catalytic subunit. (435 aa)    
Predicted Functional Partners:
SDY55638.1
Glutamate synthase (NADPH/NADH) small chain.
 0.999
SDY55767.1
Dihydropyrimidinase.
 
 0.995
SDY18933.1
Glutamate synthase (NADPH) small subunit.
 
 0.989
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
  
 0.988
SDY91506.1
Glutamate synthase (NADH) small subunit.
 
 0.982
SDY17357.1
Dihydroorotase.
  
 0.980
pyrC
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.
  
 
 0.977
SDY68339.1
TIGR04076 family protein.
   
 0.952
SDY00638.1
Indolepyruvate ferredoxin oxidoreductase.
    
 0.951
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
   
 
 0.940
Your Current Organism:
Citreimonas salinaria
NCBI taxonomy Id: 321339
Other names: C. salinaria, Citreimonas salinaria Choi and Cho 2006, DSM 26880, JCM 13036, KCCM 42116, Rhodobacteraceae bacterium CL-SP20, strain CL-SP20
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