STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY59483.1anti-ECFsigma factor, ChrR. (220 aa)    
Predicted Functional Partners:
SDY59507.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.999
SDX96665.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.983
SDY59521.1
Hypothetical protein.
 
  
 0.978
SDY59541.1
Hypothetical protein.
 
  
 0.948
SDY59590.1
Short-chain dehydrogenase.
 
   
 0.926
SDY59574.1
Protein of unknown function.
 
   
 0.880
SDY59553.1
Glycoside/pentoside/hexuronide:cation symporter, GPH family.
 
   
 0.878
SDX87452.1
Sigma-70, region 4.
  
 
 0.754
SDX87489.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.754
SDY34476.1
Response regulator receiver protein.
  
 
 0.754
Your Current Organism:
Citreimonas salinaria
NCBI taxonomy Id: 321339
Other names: C. salinaria, Citreimonas salinaria Choi and Cho 2006, DSM 26880, JCM 13036, KCCM 42116, Rhodobacteraceae bacterium CL-SP20, strain CL-SP20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.